Tutorials and related documents:


Computational Methods Summary

Linux - Basic Commands

Intro to Cambridge Structural Database

Intro to Gaussian16
(Spreadsheet for this tutorial)

Gaussian SN2 Transition State

Gaussian Spin Polarization

Gaussian TDDFT - Gas Phase

Gaussian TDDFT - Solution Phase

Gaussian/GaussView tips


xtb and related programs:

Introduction to xtb and CREST calculations

Molecular Structure Searches in CREST and xtb

Running xtb via Gaussian

Running multiple xtb/Gaussian jobs automatically

xtb and CREST tips


Docking with metal-containing ligands:

Ligand-protein docking with xtb

Ligand-protein docking MetalDock


ORCA and related programs:

ORCA Basics

Excited States in ORCA: STEOM-DLPNO-CCSD

Running ORCA via Gaussian

ORCA Version Notes

ORCA tips


Other how-to documents:

Basis Sets

Choosing a Functional

Modeling the steps of an organic synthesis: Part 1. Part 2. Part 3. Part 4.

Calculating Reduction Potentials with DFT


Maestro and related programs:

Tips on using Maestro remotely.

Intro to Molecular Mechanics in Macromodel + Maestro: Conformers of Lactose

This Lactose tutorial uses the Glyco Sciences DB

Glide + Maestro - Intro to Docking

Desmond + Maestro - Intro to Molecular Dynamics

Intro to Coarse-Grained Protein Modeling

Intro to Quantum Espresso: graphene layers

Maestro Quick Reference Card (pdf) - UC Berkeley only

Maestro Keyboard Shortcuts

Maestro Documentation and Tutorials - UC Berkeley only

Jaguar + Maestro - DFT and Electrostatic Potential Surface

Older Tutorials - PDFS - Not regularily updated


Materials Studio

Intro to Materials Studio

Building a COF in Materials Studio

Biomolecule/Surface Interface

Introduction to DFTB+


QChem

QChem Primer

Q-Chem/IQmol tips


Sample files for many tutorials

links here


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